Are you guys sure that there is a special cue format for ape/flac files?
I believe that there is only 1 "standard" as written in wiki:
http://en.wikipedia.org/wiki/Cue_sheet_%28computing%29s/th like this
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TITLE "Live in Berlin, 1998"
PERFORMER "Faithless"
FILE "faithless - live in berlin.mp3" MP3
TRACK 01 AUDIO
TITLE "Reverence"
PERFORMER "Faithless"
INDEX 01 00:00:00
TRACK 02 AUDIO
TITLE "She's My Baby"
PERFORMER "Faithless"
INDEX 01 06:42:00
TRACK 03 AUDIO
TITLE "Take The Long Way Home"
PERFORMER "Faithless"
INDEX 01 10:54:00
TRACK 04 AUDIO
TITLE "Insomnia"
PERFORMER "Faithless"
INDEX 01 17:04:00
TRACK 05 AUDIO
TITLE "Bring The Family Back"
PERFORMER "Faithless"
INDEX 01 25:44:00
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Probably you'll have to substitute the MP3 at the end of the "File"-Line with APE or FLAC
but I have no access to any flac or ape file atm to verify that myself. I just know that my wav-cues have WAV at that position.
-DG